PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AS_68775100B.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 189aa    MW: 20015.2 Da    PI: 6.4995
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AS_68775100B.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.51.2e-27968258
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                   WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58
                           dDgy+WrKYGqK++ gs+fprsYYrCt++   gC +kkkv+r ++dp + e+tY g+H +
  Traes_6AS_68775100B.1  9 DDGYTWRKYGQKDILGSRFPRSYYRCTHKnyyGCDAKKKVQRLDDDPFMYEVTYCGSHSC 68
                           8***************************99999*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-26768IPR003657WRKY domain
SuperFamilySSF1182904.45E-25768IPR003657WRKY domain
SMARTSM007743.5E-37870IPR003657WRKY domain
PfamPF031067.3E-26968IPR003657WRKY domain
PROSITE profilePS5081121.448967IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MGNIELPPDD GYTWRKYGQK DILGSRFPRS YYRCTHKNYY GCDAKKKVQR LDDDPFMYEV  60
TYCGSHSCLT STTPLLNFPT ATATATATNS PTAATGSGLA PADHFMAPTE QAAVSTSMHL  120
GVGWMPASFQ GVVAGSGAGG GSSAGMQTSV STAARDTDYP ALDLADVMFN SGGSVGMDGI  180
FSSHHRRDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2lex_A1e-129671873Probable WRKY transcription factor 4
1wj2_A1e-129671873Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2878172e-77AK287817.1 Oryza sativa Japonica Group cDNA, clone: J065181J09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566384.37e-75PREDICTED: WRKY transcription factor 55-like
SwissprotQ9SHB57e-37WRK55_ARATH; WRKY transcription factor 55
TrEMBLW5GE051e-140W5GE05_WHEAT; Uncharacterized protein
STRINGBRADI2G30800.11e-74(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97963344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.12e-35WRKY DNA-binding protein 55
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]